The freedom to run the program as you wish
The freedom to run the program means the freedom for any kind of person or organization to use it on any kind of computer system, for any kind of overall job and purpose, without being required to communicate about it with the developer or any other specific entity. In this freedom, it is the user’s purpose that matters, not the developer’s purpose; you as a user are free to run the program for your purposes, and if you distribute it to someone else, she is then free to run it for her purposes, but you are not entitled to impose your purposes on her.
The freedom to run the program as you wish means that you are not forbidden or stopped from making it run. This has nothing to do with what functionality the program has, whether it is technically capable of functioning in any given environment, or whether it is useful for any particular computing activity.